pfam | Pfam is now hosted by InterPro

Keyword	CPC	PCC	Volume	Score	Length of keyword
pfam	1.6	0.6	1278	33	4

Keyword	CPC	PCC	Volume	Score
pfam	1.75	0.9	6637	38
pfam database	1.75	0.5	8155	58
pfam9b	0.44	0.2	1241	78
pfam domain	1.21	1	2024	39
pfamscan	0.54	0.7	5122	11
family sonic.net	0.56	0.7	371	73
pfam search	1.99	0.7	4252	8
pfamoqbuy	1.98	0.1	1587	82
pfam-a.hmm	1.61	0.3	5441	13
pfam_scan	1.87	0.5	9670	80
pfamily	0.61	0.8	8444	96
pfam98	1.72	0.8	7578	62
pfam interpro	1.44	0.3	8834	49
pfam.xfam.org	1.86	0.5	9026	95
family guy	1.9	0.1	2663	32
pfammatter baden	0.75	0.4	4345	24
pfam annotation	1.82	0.2	3429	54
pfam family	0.21	0.6	6484	48

Search Results related to pfam on Search Engine

Pfam is now hosted by InterPro
xfam.org

https://pfam-legacy.xfam.org/

WEBPfam 36.0 (20,795 entries, 659 clans) The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). QUICK LINKS. SEQUENCE SEARCH. VIEW A PFAM ENTRY. VIEW A CLAN. VIEW A SEQUENCE. VIEW A STRUCTURE. KEYWORD SEARCH.

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Pfam: Home page
amazonaws.com

https://s3-us-west-2.amazonaws.com/webcitation/4d6eb9c535156c11ca12daddcc268eedb6c004c8

WEBYou can find data in Pfam in various ways... Analyze your protein sequence for Pfam matches. View Pfam family annotation and alignments. See groups of related families. Look at the domain organisation of a protein sequence. Find the domains on a PDB structure. Query Pfam by keywords.

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Pfam: The protein families database in 2021 - PMC - National …
nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779014/

WEBJan 1, 2021 · Pfam is a database of protein families and domains that is widely used to analyse novel genomes, metagenomes and to guide experimental work on particular proteins and systems ( 1, 2 ). Each Pfam family has a seed alignment that contains a representative set of sequences for the entry.

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Pfam - Wikipedia
wikipedia.org

https://en.wikipedia.org/wiki/Pfam

WEBPfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models. The most recent version, Pfam 36.0, was released in September 2023 and contains 20,795 families.

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The Pfam protein families database in 2019 - PMC - National …
nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324024/

WEBJan 1, 2019 · Pfam is a database of protein families (1,2). Briefly, each Pfam database entry is comprised of a seed alignment, which forms the basis to build a profile hidden Markov model (HMM) using the HMMER software ( http://hmmer.org/ ) ( 3 , 4 ).

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Pfam: the protein families database - PMC - National Center for
nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965110/

WEBJan 1, 2014 · Pfam is a database of curated protein families, each of which is defined by two alignments and a profile hidden Markov model (HMM). Profile HMMs are probabilistic models used for the statistical inference of homology (1,2) built from an aligned set of curator-defined family-representative sequences. A high-quality seed alignment is …

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Pfam: The protein families database in 2021 - PubMed
nih.gov

https://pubmed.ncbi.nlm.nih.gov/33125078/

WEBJan 8, 2021 · The Pfam database is a widely used resource for classifying protein sequences into families and domains. Since Pfam was last described in this journal, over 350 new families have been added in Pfam 33.1 and numerous improvements have been made to existing entries.

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Pfam entry types | Pfam - EMBL-EBI
ebi.ac.uk

https://www.ebi.ac.uk/training/online/courses/pfam-creating-protein-families/pfam-entry-types/

WEBPfam is a database of conserved evolutionary units. It can be used to explore domain (s) and other functional regions in a protein and give insight into the function of that protein.

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InterPro - EMBL-EBI
ebi.ac.uk

https://www.ebi.ac.uk/interpro/entry/pfam/

WEBInterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.

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Pfam Documentation
readthedocs.io

https://pfam-docs.readthedocs.io/_/downloads/en/latest/pdf/

WEBPfam is a large collection of protein families, each represented by multiple sequence aligments and profile hidden Markov models (HMMs). CHAPTER. ONE. CONTENTS: 1.1 Summary. Proteins are generally comprised of one or more functional regions, commonly termed domains.

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